Tutorials

XClone base

For getting started, we recommend XClone’s tutorial for TNBC1 from 10x Genomics, and BCH869 from smart-seq2. There are two versions of tutorial: One contains main 3 modules (RDR module, BAF module and Combine module), another one is detailed step-by-step processing of XClone containing preprocessing, RDR fitting, BAF fitting and exploration on CNV visualization and the identification of cell clones.

Examples of XClone and steps for reproducible results are provided in Jupyter Notebook under examples folder.

Please refer to Tutorials analyzing TNBC1 and BCH869 datasets.

CNV Visualization

This tutorial shows how to visually explore CNVs results using XClone.