Release History
Version 0.3.4
remove deprecated funcs
update plotting tool, mainly in color settings
update xclone tutorials in version 0.3.4
BAF local phasing improvement
BAF module support 3 and 5 allele bias states
Combine module support prob correct mode for copy gain
Combine module support prob correct mode for copy loss (default)
update libratio capping and add cell filter limits
use counts ratio as default
libratio fitting update
provide new denoise function (denoise by cluster)
add ROC evaluation function in analysis module
add functions for XClone clustering
wrap independent plotting modules
potential init to add predefined segmentation
minor debug on BAF guide allele bias ratio
add tutorials in xclone plotting #
add tutorials in xclone data analysis #
Version 0.3.3
Add tutorials for data loadding
Wrap data loading for 3 main modules
try supporting h5py higher version
provide func to get results of different resolution (for benchmarking)
updates in config: add default Smartseq_Config
minor updates in other modules’ configs and general configs
BAF module update: feature specific concentration; extreme DP detection and rescaling(test)
RDR module update: guide chr exclude chr X&Y
more protecting steps in wrapped main module
Version 0.3.2
fix bugs in loadding demo datasets
Version 0.3.1
Wrap 3 main modules: RDR, BAF and Combine
Add tutorials and documentations
Provide demo data
Version 0.3.0
Alpha version of XClone released